Deep Fritz 13 Portable Torrent
Today, more than 20 years since Deep Blue defeated Kasparov, chess engines have even become a lot stronger and increase in playing strength each year. This is partly due to the increase in processing power that enables calculations to be made to even greater depths in a given time.
We present XS, a skilled FASTQ read simulation tool, flexible, portable (does not need a reference sequence) and tunable in terms of sequence complexity. It has several running modes, depending on the time and memory available, and is aimed at testing computing infrastructures, namely cloud computing of large-scale projects, and testing FASTQ compression algorithms. Moreover, XS offers the possibility of simulating the three main FASTQ components individually (headers, DNA sequences and quality-scores).
We are grateful to Christine Reinsch (Roche) and Esteban Czwan (Roche), for detailed explanations on specific Roche-454 sequencers. We also thank Kieran Emptage (Life Tech) and Greg Tyrelle (Life Tech), for providing valuable support on Ion Torrent sequencers. This work was supported by FEDER through the Operational Program Competitiveness Factors – COMPETE and by National Funds through FCT – Foundation for Science and Technology, in the context of the projects FCOMP-01-0124-FEDER-022682 (FCT reference PEst-C/EEI/UI0127/2011) and Incentivo/EEI/UI0127/2013.
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